extendedMD.mdl

extendedMD.mdl.compute_motif_mdl_cost(members_dic_list, bs_len)

This function compute the MDL cost associated to the motif that generated the members in members_dic_list, as proposed by Tanaka et all

Parameters:

• members_dic_list (list of dic) – list of dictionaries related to the BS subsequences that belong to a motif
• bs_len (list of int) – list of the lengths of each BS sequence

Returns:

mdl cost

Return type:

float

extendedMD.mdl.compute_segmentation_mdl_cost(seg_len_list)

This function computes the MDL cost associated with the lengths split BS sequence. This is a middle step in the MDL cost computation proposed by Tanaka et all as proposed by Tanaka et all

Parameters:seg_len_list (list of list of int) – list of split BS lengths Returns:mdl cost Return type:float

extendedMD.mdl.split_bs_len(members_dic_list, bs_len)

This function splits the BS sequence based on the position of the motif members (i.e. subsequences in members_dic_list). This is a middle step in the MDL cost computation proposed by Tanaka et all

Parameters:

• members_dic_list (list of dic) – list of dictionaries related to the BS subsequences that belong to a motif
• bs_len (list of int) – list of the lengths of each BS sequence

Returns:

list of split BS lengths

Return type:

list of list of int